PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00003.160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 308aa    MW: 33233.8 Da    PI: 5.5665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00003.160genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.4e-10225248226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++far G+Ck Gd+CkF Hg
  Jcr4S00003.160 225 GYRPCMYFAR-GFCKNGDNCKFVHG 248
                     589*******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-5225249IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7225248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6226248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5227248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732228250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
SKITNLDPEN AYKIMGYILI QGLSDKDLFS LAFGSESLLQ SVIIKAKTQL GFSTNALSTP  60
SAPSSPSPLN PISRPSNSHN PFSQSGSRVS SFVDFAKNPS PHSWPAPCSG FTNNNSTVSI  120
SPKSSPFLSY DNIRAGSALV PPYSKNGVNG SADTGNNNSD LLNEYQLDEY FSFLDDLSPQ  180
HEEFVDPRLQ LSGFGMNNVD SHLHRRRFSE SDACFGTEDG GFGIGYRPCM YFARGFCKNG  240
DNCKFVHGGF GGDNIGEVSA GSAIVGSPGE MEGLYLQQHE EIMRMKGCTA PAKIGLQQVH  300
EFSVAARE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090043.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
RefseqXP_012090042.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A067JE290.0A0A067JE29_JATCU; Uncharacterized protein
STRINGPOPTR_0009s05510.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66967